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Techniques in genetic engineering
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ISBN: 9781482260892 Year: 2015 Publisher: Boca Raton CRC Press

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Zero to genetic engineering hero : The beginner's guide to programming bacteria at Home, school & in the makerspace
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ISBN: 9781999451103 Year: 2018 Publisher: Justin Pahara

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Complexity in Chemistry, Biology, and Ecology
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ISBN: 9780387258713 Year: 2005 Publisher: Boston MA Springer US

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This book, written by an international team of experts, introduces the reader to various aspects of complexity theory and its applications. It illustrates the latest trends in science to go beyond the mechanistic Newtonian view of the world by shifting the focus to self-organization, adaptation, and emergent phenomena. The authors discuss these properties of complex systems in biology, ecology and chemistry along with the structure and interconnectedness of the "layers" of complexity. The qualitative description is complemented by a discussion of methods for complexity quantification. Networks are covered in detail as a universal language of the complex world. General readers, as well as undergraduate and graduate students and researchers in life sciences, chemistry, and nanotechnology will find this book to be of great interest.


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Cell Line Development
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ISBN: 9789048122455 Year: 2009 Publisher: Dordrecht Springer Netherlands

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Mammalian cell lines command an effective monopoly for the production of therapeutic proteins that require post-translational modifications. This unique advantage outweighs the costs associated with mammalian cell culture, which are far grater in terms of development time and manufacturing when compared to microbial culture. The development of cell lines has undergone several advances over the years, essentially to meet the requirement to cut the time and costs associated with using such a complex hosts as production platforms. This book provides a comprehensive guide to the methodology involved in the development of cell lines and the cell engineering approach that can be employed to enhance productivity, improve cell function, glycosylation and secretion and control apoptosis. It presents an overall picture of the current topics central to expression engineering including such topics as epigenetics and the use of technologies to overcome positional dependent inactivation, the use of promoter and enhancer sequences for expression of various transgenes, site directed engineering of defined chromosomal sites, and examination of the role of eukaryotic nucleus as the controller of expression of genes that are introduced for production of a desired product. It includes a review of selection methods for high producers and an application developed by a major biopharmaceutical industry to expedite the cell line development process. The potential of cell engineering approch to enhance cell lines through the manipulation of single genes that play important roles in key metabolic and regulatory pathways is also explored throughout.


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Ribonucleases
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ISBN: 9783642210785 Year: 2011 Publisher: Berlin Heidelberg Springer Berlin Heidelberg Imprint Springer

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Ribonucleases are a ubiquitous and functionally diverse group of enzymes that have a common ability to cleave RNA. Either through scission of internal phosphodiesters, or removal of nucleotides from RNA 5' or 3' ends, ribonucleases perform essential roles in gene expression and regulation, genome replication and maintenance, host defense, stress response, and viral strategies of infection. Ribonucleases have also served as highly informative models to understand virtually every aspect of biomolecular structure and function. The fifteen chapters in this volume are written by recognized researchers in the field, and provide in-depth analyses of the major ribonuclease families. Particular focus is given to the relation of ribonuclease structure and mechanism to biological function, as well as ribonuclease dysfunction in certain disease states. Other topics include the evolutionary genetics and functional diversification of ribonucleases, engineered ribonucleases as anti-cancer agents, the mechanisms of action of artificial ribonucleases, and ribonucleases as models to understand protein folding and stability. This volume should serve as an essential reference for a broad range of researchers and educators with interests in RNA metabolism, enzymology, and gene regulation.


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RNA 3D Structure Analysis and Prediction
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ISBN: 9783642257407 Year: 2012 Publisher: Berlin Heidelberg Springer Berlin Heidelberg Imprint Springer

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With the dramatic increase in RNA 3D structure determination in recent years, we now know that RNA molecules are highly structured. Moreover, knowledge of RNA 3D structures has proven crucial for understanding in atomic detail how they carry out their biological functions. Because of the huge number of potentially important RNA molecules in biology, many more than can be studied experimentally, we need theoretical approaches for predicting 3D structures on the basis of sequences alone.  This volume provides a comprehensive overview of current progress in the field by leading practitioners employing a variety of methods to model RNA 3D structures by homology, by fragment assembly, and by de novo energy and knowledge-based approaches.


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Homing Endonucleases and Inteins
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ISBN: 9783540294740 Year: 2005 Publisher: Berlin Heidelberg Springer Berlin Heidelberg

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This book provides the first and only comprehensive description and detailed summary of the genetics, structure, function, mechanisms of action, evolution and engineering of homing endonucleases and inteins. These two unique protein superfamilies, which are tied together through their frequent fusion and coevolution, have generated considerable excitement for their fundamental, structural, and functional properties, their evolution as parasitic elements, and their widespread applications as gene targeting agents and as instruments for the generation of modified proteins and novel protein combinations.


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Plastics from Bacteria : Natural Functions and Applications
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ISBN: 9783642032875 9783642032882 9783642032868 9783642262197 Year: 2010 Publisher: Berlin Heidelberg Springer Berlin Heidelberg

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Due to the possibility that petroleum supplies will be exhausted in the next decades to come, more and more attention has been paid to the production of bacterial pl- tics including polyhydroxyalkanoates (PHA), polylactic acid (PLA), poly(butylene succinate) (PBS), biopolyethylene (PE), poly(trimethylene terephthalate) (PTT), and poly(p-phenylene) (PPP). These are well-studied polymers containing at least one monomer synthesized via bacterial transformation. Among them, PHA, PLA and PBS are well known for their biodegradability, whereas PE, PTT and PPP are probably less biodegradable or are less studied in terms of their biodegradability. Over the past years, their properties and appli- tions have been studied in detail and products have been developed. Physical and chemical modifications to reduce their cost or to improve their properties have been conducted. PHA is the only biopolyester family completely synthesized by biological means. They have been investigated by microbiologists, molecular biologists, b- chemists, chemical engineers, chemists, polymer experts, and medical researchers for many years. PHA applications as bioplastics, fine chemicals, implant biomate- als, medicines, and biofuels have been developed. Companies have been est- lished for or involved in PHA related R&D as well as large scale production. It has become clear that PHA and its related technologies form an industrial value chain in fermentation, materials, feeds, and energy to medical fields.


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Lentiviral Vectors and Gene Therapy
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ISBN: 9783034804028 Year: 2012 Publisher: Basel Springer Basel

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Gene therapy was conceived during the early and mid part of the 20th century. At first, it was considered a revolutionary biomedical procedure, which could potentially cure any disease for which the molecular bases were understood. Since then, gene therapy has gone through many stages and has evolved from a nearly unrealistic perspective to a real life application. Clinical efficacy in humans was demonstrated at the beginning of this century after its successful application in small-scale clinical trials to cure severe immunodeficiency in children. However, their successes were overshadowed some time later by the occurrence of vector-related leukaemia in a number of treated children. It is in this context that lentiviral vectors have appeared, with improved efficiency and, possibly, increased biosafety. Very recently, the first clinical trials with lentivectors have been carried out with some success. This Brief firstly defines gene therapy, and places lentivectors within this fascinating therapeutic strategy. Then follows a comprehensive description of the development of retroviral and lentiviral vectors and how to specifically target distinct cell types and tissues. The authors also discuss the application of lentivector gene therapy for the treatment of cancer and autoimmune diseases, ending with the application of lentivectors in human gene therapy clinical trials.


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Rice Functional Genomics : Challenges, Progress and Prospects
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ISBN: 9780387489148 Year: 2007 Publisher: New York NY Springer New York

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Rice has been chosen as the model cereal for functional genomics by the international scientific community not only because it is a major global food crop but also because of its small genome, the ease with which it can be transformed, its well understood genetics with detailed genome physical maps and dense molecular markers, and the existence of great similarities in gene sequence, gene structure, gene order and gene function among all the cereals and grasses. Genes identified in rice as being important agronomically are also important in other cereals, and any understanding of rice genes is directly applicable to other cereals. Rice Functional Genomics - Challenges, Progress and Prospects covers the whole spectrum of rice functional genomics. The contributed chapters reflect the collective wisdom of more than 70 leading scientists working in this emerging and fascinating area of science. In addition to overviews of the current status of genome sequencing and annotation, various chapters describe the tools and resources being developed worldwide such as expressed sequence tags (ESTs), full-length cDNAs, gene expression profiles (transcriptome, proteome and metabolome), chemical- and radiation-induced mutants, TILLING resources, insertional knockout mutants (T-DNA, transposon and retrotransposon) and activation tags. Exploitation of naturally occurring alleles, Oryza map alignments, gene targeting by homologous recombination and gene silencing by RNAi as well as the application of functional genomics tools for crop improvement and the power of comparative genomics are covered in separate chapters. Various bioinformatics tools and resources pertinent to rice functional genomics are also described and discussed. It is hoped that scientists involved in all aspects of rice research will find this book useful as it spans the divide between molecular biology and plant improvement. About the Editor: Narayana M. Upadhyaya is currently a Principal Research Scientist at CSIRO Plant Industry, Canberra, Australia and leads the group working on Rice Functional Genomics. Previously, he pioneered research into the sequencing of the Rice Ragged Stunt Oryzavirus (RRSV) genome and produced RRSV genome-based synthetic resistance gene constructs while working on a Rockefeller Foundation-funded Rice Biotechnology project (1990-1997) which involved international collaboration. He has been the principal investigator in the bilateral science and technology collaborative research with China (1997-2000). He was instrumental in developing and setting up the rice transformation facility at CSIRO Plant Industry not only for RRSV research but also for other research projects where rice has been used as a model system. He has developed the T-DNA double right border (DRB) vector technology for generating selectable marker-free (SMF) transgenic plants. Since then he has developed a research project on "Rice Functional Genomics" (funded by Australia's RIRDC and the NSW Centre for Agricultural Genomics) aimed at determining the function of rice genes using an insertional mutagenesis approach. The tools and resources being developed in the group are internationally competitive and as a result CSIRO Plant Industry has become an active member of the International Rice Functional Genomics Consortium. Dr. Upadhyaya has 50 refereed papers, 11 invited presentations and over 50 conference presentations to his credit.

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