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This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact

GWAS—genome-wide association study --- machine learning --- complex diseases --- gene-gene interaction --- epistasis

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This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact

multi-locus genome-wide association study --- mixed linear model --- mrMLM --- FASTmrMLM --- FASTmrEMMA --- ISIS EM-BLASSO --- pLARmEB --- pKWmEB --- complex traits --- omics big dataset

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Rabbit livestock is especially important in the Mediterranean area and in the semi-arid zones of Africa, Asia, and America, representing a valuable alternative source of good animal protein of high quality (low fat and low cholesterol). However, rabbit husbandry should adapt to be a competitive and sustainable sector. In addition, it must maintain a balance between rabbit welfare, customer demands, and breeder requirements. Then, improvement in breeding systems is needed and may involve avoiding hormones and antibiotics in rabbit management; enhancing the efficiency of reproductive procedures such as artificial insemination systems and freezing of semen and embryos; extending the productive lifespan of does; improving genetic selection systems; and adjusting nutritional systems to optimize the physiological status of animals and the immune response. This Special Issue concerns all these challenges in increasing rabbit productivity and sustainability.

Oryctolagus cuniculus --- SNPs --- SLAF-seq --- genome-wide association study --- growth trait --- myeloperoxidase --- lysozyme --- rabbits --- viral infection --- rabbit hemorrhagic disease --- goji berries --- rabbit --- insulin resistance --- leptin --- non-esterified fatty acids --- pregnancy --- lactation --- body condition score --- principal component analysis --- gene expression --- endometrium --- oviduct --- spermatozoa --- seminal plasma --- inflammation --- angiogenesis --- corpus luteum --- reproduction --- genomic selection --- imputation --- litter size --- genomic simulation --- artificial insemination --- antibiotics --- antibacterial activity --- semen quality --- reproductive performance --- sperm quality --- cryopreservation --- animal model --- assisted reproductive technology --- CTSS --- granulosa cells --- proliferation --- apoptosis --- hormone secretion --- body composition --- fertility --- kits born alive --- rabbit does --- feed intake --- free tri-iodothyronine --- thyroxine --- insulin --- glucose --- corticosterone --- NEFA --- fetus --- placenta

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In this Special Issue of Genes entitled “Genetic Conditions Affecting the Skeleton: Congenital, Idiopathic Scoliosis and Arthrogryposis”, evidence is presented that suggests that congenital, idiopathic scoliosis, and arthrogryposis share similar overlapping, but also distinct, etiopathogenic mechanisms, including connective tissue and neuromuscular mechanisms. Congenital scoliosis (CS) is defined by the presence of an abnormal spinal curvature, due to an underlying vertebral bony malformation (VM). Idiopathic scoliosis (IS) is defined by the presence of an abnormal structural spinal curvature of ≥10 degrees in the sagittal plane, in the absence of an underlying VM. Arthrogryposis is defined by the presence of congenital contractures in two or more joints of the appendicular skeleton. All three conditions have complex genetic causes. This Special Issue highlights the complex nature of these conditions and current concepts in our approach to better understand their genetics.

Research & information: general --- Biology, life sciences --- Genetics (non-medical) --- spinal curvatures --- scoliosis --- idiopathic --- DNA methylation --- pyrosequencing --- estrogen receptor 1 --- ESR1 --- scoliosis progression --- adolescent idiopathic scoliosis --- idiopathic scoliosis --- exome sequencing --- spine --- polygenic --- variants --- musculoskeletal disease --- cytoskeleton --- extracellular matrix --- contracture --- arthrogryposis --- congenital --- POC5 --- cilia --- genetics --- spine deformity --- genetic predisposition --- complex trait --- model animal --- genome wide association study --- genetic linkage study --- Amyoplasia --- DECIPHER (DatabasE of genomiC variation and Phenotype in Humans using Ensemble Resources) --- CNV (copy number variant) --- DA (distal arthrogryposis) --- IPA (ingenuity pathway analysis) --- HPO (human phenotype ontology) --- akinesia --- MYOD --- IGF2 --- FGFR1 (Fibroblast growth factor receptor 1) --- genetic variations --- congenital scoliosis --- monozygotic twin --- epigenome-wide association study --- bone --- discordant --- curve severity --- differentially methylated region --- congenital vertebral malformation --- copy number variant --- CNV --- CHRNG --- distal arthrogryposis type 8 --- Escobar --- multiple pterygium syndrome --- MYH3 --- protein tyrosine kinase 7 (PTK7) --- whole exome sequencing --- n/a

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The development of new plant varieties is a long and tedious process involving the generation of large seedling populations for the selection of the best individuals. While the ability of breeders to generate large populations is almost unlimited, the selection of these seedlings is the main factor limiting the generation of new cultivars. Molecular studies for the development of marker-assisted selection (MAS) strategies are particularly useful when the evaluation of the character is expensive, time-consuming, or with long juvenile periods. The papers published in the Special Issue “Plant Genetics and Molecular Breeding” report highly novel results and testable new models for the integrative analysis of genetic (phenotyping and transmission of agronomic characters), physiology (flowering, ripening, organ development), genomic (DNA regions responsible for the different agronomic characters), transcriptomic (gene expression analysis of the characters), proteomic (proteins and enzymes involved in the expression of the characters), metabolomic (secondary metabolites), and epigenetic (DNA methylation and histone modifications) approaches for the development of new MAS strategies. These molecular approaches together with an increasingly accurate phenotyping will facilitate the breeding of new climate-resilient varieties resistant to abiotic and biotic stress, with suitable productivity and quality, to extend the adaptation and viability of the current varieties.

n/a --- GA2ox7 --- cabbage --- OsGPAT3 --- oleic acid --- OsCDPK1 --- nutrient use efficiency --- stem borer --- yellow-green-leaf mutant --- branching --- epigenetics --- NPK fertilizers --- particle bombardment --- stress tolerance --- overexpression --- glycine --- heat-stress --- bulk segregant RNA-seq --- Prunus --- protein-protein interaction --- AdRAP2.3 --- plant architecture --- waterlogging stress --- genes --- Cucumis sativus L. --- Flower color --- resistance --- Tobacco --- gynomonoecy --- drought stress --- Brassica oleracea --- starch biosynthesis --- Overexpression --- WUS --- agronomic traits --- Ghd7 --- the modified MutMap method --- cry2A gene --- light-induced --- gene expression --- breeding --- Heterodera schachtii --- ABA --- Green tissue-specific expression --- subcellular localization --- squamosa promoter binding protein-like --- transcriptome --- FAD2 --- As3+ stress --- metallothionein --- flowering --- bisulfite sequencing --- tomato --- quantitative trait loci --- Promoter --- marker–trait association --- DEGs --- cytoplasmic male sterile --- Rosa rugosa --- MADS transcription factor --- yield --- P. suffruticosa --- CYC2 --- common wild rice --- Actinidia deliciosa --- gene-by-gene interaction --- Aechmea fasciata --- hybrid rice --- soybean --- R2R3-MYB --- bread wheat --- BRANCHED1 (BRC1) --- linoleic acid --- differentially expressed genes --- complex traits --- transgenic chrysanthemum --- D-genome --- Brassica --- candidate gene --- SmJMT --- gene expression pattern --- RNA-Seq --- candidate genes --- leaf shape --- Brassica napus --- recombination-suppressed region --- anthocyanin --- WRKY transcription factor --- Idesia polycarpa var --- single nucleotide polymorphism --- bud abortion --- QTL --- reproductive organ --- transient overexpression --- Elongated Internode (EI) --- sugarcane --- abiotic stress --- Oryza sativa L. --- RrGT2 gene --- Hd1 --- cZR3 --- cytoplasmic male sterility (CMS) --- seed development --- tapetum --- near-isogenic line (NIL) --- phytohormones --- TCP transcription factor --- pollen accumulation --- Anthocyanin --- WRKY --- quantitative trait loci (QTLs) --- salt stress --- floral scent --- sucrose --- Ogura-CMS --- root traits --- endosperm development --- Zea mays L. --- sesame --- Bryum argenteum --- AP2/ERF genes --- transcriptional regulation --- WB1 --- haplotype block --- broccoli --- agronomic efficiency --- durum wheat --- gene pyramiding --- Oryza sativa --- genetics --- flowering time --- Cicer arietinum --- Hs1pro-1 --- endosperm appearance --- phenolic acids --- anther wall --- bromeliad --- genomics --- transgenic --- DgWRKY2 --- Clone --- yield trait --- flower symmetry --- partial factor productivity --- rice --- molecular breeding --- genotyping-by-sequencing --- Chimonanthus praecox --- nectary --- Salvia miltiorrhiza --- pollen development --- regulation --- ZmES22 --- genome-wide association study --- VIGS --- iTRAQ --- genome-wide association study (GWAS) --- ethylene-responsive factor --- starch --- molecular markers --- rice quality --- Chrysanthemum morifolium --- marker-trait association