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Book
Actinobacteria in Special and Extreme Habitats: Diversity, Function Roles and Environmental Adaptations, Second Edition
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Year: 2019 Publisher: Frontiers Media SA

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This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact


Book
Insect morphology and phylogeny : a textbook for students of entomology
Authors: --- --- ---
ISBN: 9783110262636 3110262630 3110264048 9783110264043 Year: 2014 Publisher: Berlin : Walter de Gruyter GmbH & Co.,

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In the last decades a remarkable renaissance has materialized in insect morphology, mainly triggered by the development of new cutting-edge technologies. This is an exciting time for biological synthesis where the mysteries and data derived from genomes can be combined with centuries of data from morphology and development. And, now, more than ever, detailed knowledge of morphology is essential to understanding the evolution of all groups of organisms. In this "age of phylogenomics" researchers rely on morphological data to support molecular findings, test complex evolutionary scenarios, and for placing fossil taxa. This textbook provides an in-depth treatment of the structures and the phylogeny of the megadiverse Hexapoda. The first part presents an up-to-date overview of general insect morphology with detailed drawings, scanning electron micrographs, and 3-D reconstructions. Also included is a chapter covering innovative morphological techniques (e.g., µ-computer tomography, 3-D modeling), brief treatments of insect development and phylogenetic methods, and a comprehensive morphological glossary. The second part is of a modern synthesis of insect systematics that includes taxon-specific morphological information for all Orders. The work is an invaluable reference for students and researchers working in all facets of biology and is a must for evolutionary biologists. A detailed understanding of morphology is essential in unraveling phylogenetic relationships and developing complex evolutionary scenarios. Increasingly researchers in phylogenomics are re/turning to morphological data to support their findings, while the development of new cutting-edge technologies has further increased interest in this growing field. This definitive handbook provides an in-depth treatment of insect morphology. The first part presents an up-to-date overview of insect morphology with detailed drawings, brilliant scanning electron micrographs and 3-D reconstructions as interactive PDFs. This is complemented by a chapter on innovative morphological techniques (e.g., µ-computer tomography, 3-D modeling) and a comprehensive morphological glossary. The second part treats the state of the art in insect systematics and includes taxon-specific morphological information for all orders. Systematics are treated formally, with for example the arguments for relationships ("apomorphies") always listed explicitly. The work is a useful reference for students and researchers working in different fields of biology and a must for those dealing with insects from an evolutionary perspective.


Book
Phylogenomic, Biogeographic, and Evolutionary Research Trends in Arachnology
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Year: 2022 Publisher: Basel MDPI - Multidisciplinary Digital Publishing Institute

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This book focuses on systematics, biogeography, and evolution of arachnids, a group of ancient chelicerate lineages that have taken on terrestrial lifestyles. The book opens with the questions of what arachnology represents, and where the field should go in the future. Twelve original contributions then dissect the current state-of-the-art in arachnological research. These papers provide innovative phylogenomic, evolutionary and biogeographic analyses and interpretations of new data and/or synthesize our knowledge to offer new directions for the future of arachnology.


Book
Biodiversity of Vegetation and Flora in Tropical Africa
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Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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African ecosystems comprise a wealthy repository of biodiversity, with a high proportion of native and endemic plant species, which makes them biologically unique and providers of a wide range of ecosystem services. A large part of African populations, in both rural and urban areas, depend on plants for their survival and welfare, but many ecosystems are being degraded, mostly due to the growing impacts of climate change and other anthropogenic actions and environmental problems. Loss of habitat and biodiversity affects livelihoods, water supply and food security and reduces the resilience of ecosystems in the African continent. The knowledge about the great African plant and ecosystem diversity, and the structure, composition and processes involved in vegetation dynamics, is crucial to promote their sustainable use and to preserve one of the most understudied regions in the world. This Special Issue aimed to gather contributions that update and improve such knowledge.


Book
Plant Organelle DNA Maintenance
Authors: ---
Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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This book provides reviews and primary research articles that discuss the replication, repair, maintenance, and structures of plant organelle genomes. Rearrangements of these genomes are common and provide a way to distinguish closely related plant species. Some articles in the book discuss recent advances in identifying specific proteins and potential mechanisms involved in DNA replication, recombination, and repair in plant mitochondria and chloroplasts.


Book
Aquatic Insects : Biodiversity, Ecology and Conservation Challenges
Authors: --- ---
ISBN: 3036549420 3036549412 Year: 2022 Publisher: MDPI - Multidisciplinary Digital Publishing Institute

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Insects have successfully inhabited all freshwater habitats on Earth and are often the most diverse and abundant species in streams and ponds. With a disproportionally high species richness compared to the area covered by freshwaters, aquatic insects represent a hotspot of diversity. They play crucial roles in aquatic food webs as primary consumers, detritivores, and predators, but they also represent an important food resource for aquatic and terrestrial predators. Many aquatic insect orders, such as mayflies, stoneflies, and caddisflies, include taxa that are highly sensitive to habitat alterations, reflecting the health of the overall aquatic ecosystem. This feature is exploited by many scientists and practitioners around the world for water and environment quality monitoring. Despite their importance in term of diversity, ecosystem services and bioindication, many aquatic insect species are critically endangered, mainly due to anthropogenic pressures on freshwaters and climate change. Although the research efforts on aquatic insects tremendously increased during the 21st century, much is still left undiscovered. This Special Issue addresses existing knowledge gaps and increases our understanding of taxonomic diversity and phylogeny, distribution patterns, and community ecology of aquatic insects through 15 new studies that cover most of the aquatic insect orders over a wide geographic range. In a context of rapid global biodiversity loss, accelerating the acquisition of both fundamental and applied knowledge is crucial.

Keywords

Research & information: general --- Biology, life sciences --- Ecological science, the Biosphere --- odonate --- flight period --- checklist --- Eastern Mediterranean --- citizen science --- climate --- water quality --- functional richness --- functional specialization --- functional evenness --- impact of mining and forest fire --- aquatic insects --- conservation --- life cycle --- limnology --- mayfly --- North Africa --- rivers --- streams --- developing country --- multivariate statistics --- bioindication value --- index scores --- WQI --- HQI --- EPT --- stoneflies --- USA --- species richness --- hierarchical unit codes --- flow intermittence --- environmental variables --- aquatic macrophytes --- karst --- dragonflies --- damselflies --- anthropogenic impact --- distribution --- local extinction --- museum study --- Plecoptera --- population decline --- island biogeography --- new species --- taxonomy --- biodiversity --- colonization --- endemism --- species radiation --- diving beetles --- freshwater --- chironomid larvae --- water pollution index (WPI) --- alpha and beta diversity --- anthropogenic pressure --- taxonomic diversity --- substrate preference --- Danube --- floodplain --- gomphid nymphs --- Orientogomphus --- Thailand --- Heteroptera --- aquatic --- species compositions --- marine insects --- Hemiptera --- biogeography --- Rif --- Atlas --- Central Plateau --- Oriental Morocco --- mayflies --- phylogenomics --- phylogenetics --- systematics --- n/a


Book
Organelle Genetics in Plants
Authors: ---
Year: 2021 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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Chloroplasts in photosynthetic organisms and mitochondria in a vast majority of eukaryotes, contain part of the genetic material of a eukaryotic cell. The organisation and inheritance patterns of this organellar DNA are quite different to that of nuclear DNA. Present-day chloroplast and mitochondrial genomes contain only a few dozen genes. Nevertheless, these organelles harbor several thousand proteins, the vast majority of them encoded by the nucleus. As a result, the expression of nuclear and organelle genomes has to be very precisely coordinated. The selection of experimental and review papers of this book covers a wide range of topics related to chloroplasts and plant mitochondria research, illustrating recent advances and diverse insights into the field of organelle genetics in plants. These works represent some of the latest research on the genetics, genomics, and biotechnology of plant mitochondria and chloroplasts, and they are of significant broad interest for the community of plant scientists, especially for those working in the subjects related to organelle genetics

Keywords

Salt stress --- organellar gene expression (OGE) --- Arabidopsis --- rice --- mitochondrial transcription termination factors (mTERFs) --- pentatricopeptide repeat (PPR) proteins --- DEAD-box RNA helicases (RHs)-containing proteins --- RNA-recognition motifs (RRMs)-containing proteins --- SIGMA FACTOR 5 --- PLASTID-SPECIFIC RIBOSOMAL PROTEIN 2 --- chloroplast genome --- free-standing ORFs --- introns --- phylogenetic analysis --- taxonomic study --- Trentepohlia odorata --- Trentepohliales --- Macrosolen --- Macrosolen cochinchinensis --- Macrosolen tricolor --- Macrosolen bibracteolatus --- Santalales --- gene loss --- phylogenetic relationship --- Utricularia amethystina --- Lentibulariaceae --- chloroplast phylogenomics --- organelle genome --- carnivorous plants --- polymorphic species --- intraspecific variation --- ndh genes --- genome structure --- genome evolution --- DNA transfer --- nuclear integrants of plastid DNA (NUPT) --- nuclear integrants of mitochondrial DNA (NUMT) --- legumes --- clover --- organelle genetics --- mitochondria --- endosymbiotic gene transfer --- gene fission --- common bean --- Phaseolus vulgaris --- mitochondrial genome --- comparative genomics --- phylogeny --- soybean --- yellow leaf mutant --- photosynthesis --- chloroplast RNA editing --- chloroplast --- SWNTs --- morphogenic regulators --- CRISPR --- protoplast regeneration --- chloroplast gene expression --- environmental stress response --- transcription --- RNA metabolism --- translation --- complex I --- intron splicing --- maturase --- NDH --- RNA editing --- n/a


Book
Advances in the Biology of Phototrophic Bacteria
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Year: 2021 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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The application of genomic, transcriptomic, and proteomic analyses brings new dimensions to our understanding of the biology of phototrophic bacteria. Comparing gene sequences of photosynthetic reaction center proteins and a key enzyme of bacteriochlorophyll biosynthesis from more than 150 genomes demonstrates the ancient roots of phototrophic bacteria. The presence and phylogeny of biosynthetic pathways of the compatible solutes ectoine and glycine betaine define groups of marine and halophilic phototrophic bacteria. The wide range of ecological niches conquered during evolution is demonstrated by the adaptation of cyanobacterial genera Scytonema, Tolypothrix, and Nostoc to different temperature ranges and the adaptation of Heliorestis species to alkaline habitats. Differences between phototrophic purple bacteria from marine and freshwater habitats are reflected in the preference for sulfidic and non-sulfidic niches. Also, a high proportion of siderophore producers was found among isolates from freshwater sources opposed to those from salty habitats . The primary colonization of carbonate rocks by a group of novel endolithic cyanobacteria and the following successions were studied over 9 months. The genomic characterization of the aerobic Dinoroseobacter strain AAP5, the strictly anaerobic and syntrophic Prosthecochloris ethylica, and the strictly anaerobic Heliorestis convoluta is reported. Significant differences in relation to oxygen are reflected in oxygen production by some species, oxygen tolerance over a wide range of concentrations, and the use of oxygen for energy generation or a strictly anaerobic lifestyle. Relations to oxygen are highlighted in papers on photooxidative stress, regulation of iron–sulfur cluster formation, and interactions of redox regulators. In situ metatranscriptomic and proteomic studies demonstrate the high metabolic flexibility of Chloroflexus aggregans in a hot spring microbial mat and show its adaptation to the changing conditions over day and night periods by a well-coordinated regulation of key metabolic processes for both phototrophic and chemotrophic growth.

Keywords

phylogeny --- photosynthetic reaction center proteins --- bacteriochlorophyll biosynthesis --- phototrophic purple bacteria --- evolution of anoxygenic photosynthesis --- iron-sulfur cluster --- isc genes --- suf genes --- antisense promoters --- OxyR --- IscR --- Irr --- anoxygenic phototrophic bacteria --- purple nonsulfur bacteria --- massive blooms --- pufM gene --- Rhodovulum --- phylogenomics --- bioerosion --- anoxygenic phototroph --- microbiome --- euendolith --- Rhodobacter capsulatus --- Rhodobacter sphaeroides --- photooxidative stress --- transcriptomics --- proteomics --- stress defense --- heliobacteria --- Heliorestis convoluta --- alkaliphilic bacteria --- soda lake --- bacteriochlorophyll g --- biological soil crust --- drylands --- niche partitioning --- nitrogen fixing cyanobacteria --- Alphaproteobacteria --- Rhodobacteraceae --- nitric oxide --- quorum sensing --- gene transfer agent --- motility --- Crp/Fnr --- Dnr --- RegA --- ChpT --- green sulfur bacteria --- syntrophy --- e-pili --- adhesion protein --- photosynthetic symbionts --- large multiheme cytochrome --- metagenomic binning --- genomes of photosynthetic bacteria --- glycine betaine biosynthesis --- ectoine biosynthesis --- osmotic adaptation --- phylogeny of osmolyte biosynthesis --- filamentous anoxygenic phototroph --- microbial mats --- hot springs --- metatranscriptomics --- energy metabolism --- carbon fixation --- aerobic anoxygenic phototrophic bacteria --- bacteriochlorophyll a --- photosynthesis genes --- rhodopsin --- Sphingomonadaceae --- aerobic anoxygenic phototrophs --- siderophore --- metallophore --- CAS assay --- Chromocurvus halotolerans strain EG19 --- n/a


Periodical
Comparative cytogenetics : international journal of plant & animal cytogenetics, karyosystematics and molecular systematics
Author:
ISSN: 19930771 1993078X Year: 2007 Publisher: St. Petersburg, Russia : [Sofia, Bulgaria] : [Published] with technical support of Zoological Institute RAS, Pensoft

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Keywords

Cytogenetics --- Phylogeny --- Biology --- Cytogénétique --- Biologie --- Periodicals. --- Classification --- Molecular aspects --- Périodiques --- Aspect moléculaire --- genetics --- cytogenetics --- Phylogenies --- Phylogeography --- Cytogenetic --- Cytogenetic Analysis --- Chromosome Disorders --- Sex Chromosome Disorders --- Life sciences --- Biomass --- Life (Biology) --- Natural history --- Cytology --- Genetics --- Cytogenetics. --- Molecular aspects. --- Molecular systematics --- Molecular biology --- Phylogenomics --- Phylogenomic --- Community Phylogenetics --- Molecular Phylogenetics --- Phylogenetic Analyses --- Phylogenetic Analysis --- Phylogenetic Clustering --- Phylogenetic Comparative Analysis --- Phylogenetic Comparative Methods --- Phylogenetic Distance --- Phylogenetic Generalized Least Squares --- Phylogenetic Groups --- Phylogenetic Incongruence --- Phylogenetic Inference --- Phylogenetic Networks --- Phylogenetic Reconstruction --- Phylogenetic Relatedness --- Phylogenetic Relationships --- Phylogenetic Signal --- Phylogenetic Structure --- Phylogenetic Tree --- Phylogenetic Trees --- Analyse, Phylogenetic --- Analysis, Phylogenetic --- Analysis, Phylogenetic Comparative --- Clustering, Phylogenetic --- Community Phylogenetic --- Comparative Analysis, Phylogenetic --- Comparative Method, Phylogenetic --- Distance, Phylogenetic --- Group, Phylogenetic --- Incongruence, Phylogenetic --- Inference, Phylogenetic --- Method, Phylogenetic Comparative --- Molecular Phylogenetic --- Network, Phylogenetic --- Phylogenetic Analyse --- Phylogenetic Clusterings --- Phylogenetic Comparative Analyses --- Phylogenetic Comparative Method --- Phylogenetic Distances --- Phylogenetic Group --- Phylogenetic Incongruences --- Phylogenetic Inferences --- Phylogenetic Network --- Phylogenetic Reconstructions --- Phylogenetic Relatednesses --- Phylogenetic Relationship --- Phylogenetic Signals --- Phylogenetic Structures --- Phylogenetic, Community --- Phylogenetic, Molecular --- Reconstruction, Phylogenetic --- Relatedness, Phylogenetic --- Relationship, Phylogenetic --- Signal, Phylogenetic --- Structure, Phylogenetic --- Tree, Phylogenetic --- Phylogeny.


Periodical
MycoKeys.
ISSN: 13144057 13144049 Year: 2011 Publisher: Sofia, Bulgaria : Pensoft Publishers,

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Aims to apply the latest trends and methodologies in publishing and preservation of digital materials to meet the highest possible standards of the cybertaxonomy era.

Keywords

Mycology --- Phylogeny --- Botany --- Mycologie --- Botanique --- classification --- Periodicals. --- Périodiques --- Mycology. --- Phylogeny. --- Botany. --- classification. --- Open Access --- current periodical --- Fungi --- taxonomy --- peer-reviewed journal --- mycology --- fungal biology --- Microbiology --- Botanical science --- Phytobiology --- Phytography --- Phytology --- Plant biology --- Plant science --- Biology --- Natural history --- Plants --- Phylogenies --- Classification --- Phylogeography --- Infectious Disease Medicine --- Phylogenomics --- Phylogenomic --- Community Phylogenetics --- Molecular Phylogenetics --- Phylogenetic Analyses --- Phylogenetic Analysis --- Phylogenetic Clustering --- Phylogenetic Comparative Analysis --- Phylogenetic Comparative Methods --- Phylogenetic Distance --- Phylogenetic Generalized Least Squares --- Phylogenetic Groups --- Phylogenetic Incongruence --- Phylogenetic Inference --- Phylogenetic Networks --- Phylogenetic Reconstruction --- Phylogenetic Relatedness --- Phylogenetic Relationships --- Phylogenetic Signal --- Phylogenetic Structure --- Phylogenetic Tree --- Phylogenetic Trees --- Analyse, Phylogenetic --- Analysis, Phylogenetic --- Analysis, Phylogenetic Comparative --- Clustering, Phylogenetic --- Community Phylogenetic --- Comparative Analysis, Phylogenetic --- Comparative Method, Phylogenetic --- Distance, Phylogenetic --- Group, Phylogenetic --- Incongruence, Phylogenetic --- Inference, Phylogenetic --- Method, Phylogenetic Comparative --- Molecular Phylogenetic --- Network, Phylogenetic --- Phylogenetic Analyse --- Phylogenetic Clusterings --- Phylogenetic Comparative Analyses --- Phylogenetic Comparative Method --- Phylogenetic Distances --- Phylogenetic Group --- Phylogenetic Incongruences --- Phylogenetic Inferences --- Phylogenetic Network --- Phylogenetic Reconstructions --- Phylogenetic Relatednesses --- Phylogenetic Relationship --- Phylogenetic Signals --- Phylogenetic Structures --- Phylogenetic, Community --- Phylogenetic, Molecular --- Reconstruction, Phylogenetic --- Relatedness, Phylogenetic --- Relationship, Phylogenetic --- Signal, Phylogenetic --- Structure, Phylogenetic --- Tree, Phylogenetic --- Floristic botany

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