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This book constitutes the proceedings of the Third International Conference on Algorithms for Computational Biology, AlCoB 2016, held in Trujillo, Spain, in June 2016. The 13 full papers presented in this volume were carefully reviewed and selected from 23 submissions. They are organized in the following topical sections: biological networks and modelling; biological structure processing; phylogenetics; and sequence analysis and rearrangement. In addition one invited talk is included.

Computer science. --- Algorithms. --- Computer science --- Data mining. --- Bioinformatics. --- Biomathematics. --- Computer Science. --- Computational Biology/Bioinformatics. --- Algorithm Analysis and Problem Complexity. --- Discrete Mathematics in Computer Science. --- Data Mining and Knowledge Discovery. --- Mathematical and Computational Biology. --- Mathematics. --- Biology --- Bio-informatics --- Biological informatics --- Algorithmic knowledge discovery --- Factual data analysis --- KDD (Information retrieval) --- Knowledge discovery in data --- Knowledge discovery in databases --- Mining, Data --- Computer mathematics --- Discrete mathematics --- Electronic data processing --- Algorism --- Informatics --- Mathematics --- Information science --- Computational biology --- Systems biology --- Database searching --- Algebra --- Arithmetic --- Science --- Data processing --- Foundations --- Computer software. --- Computational complexity. --- Complexity, Computational --- Machine theory --- Software, Computer --- Computer systems --- Computer science—Mathematics.