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Book
30 years of the Comet Assay : an overview with some new insights
Authors: --- --- ---
ISBN: 9782889196494 Year: 2015 Publisher: Frontiers Media SA

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Abstract

By means of this ‘Frontiers in Genetics’ research topic, we are celebrating 30 years of the Comet Assay. The first paper on this single-cell gel electrophoresis assay was published in 1984 by O. Ostling and K.J. Johanson (Biochem. Biophys. Res. Commun. Vol.123: 291-298). The comet assay is a versatile and sensitive method for measuring single- and double-strand breaks in DNA. By including lesion-specific enzymes in the assay, its range and sensitivity are greatly increased, but it is important to bear in mind that their specificity is not absolute. The comet assay (with and without inclusion of lesion-specific enzymes) is widely used as a biomarker assay in human population studies - primarily to measure DNA damage, but increasingly also to assess the capacity of cells for DNA repair. Ostling and Johanson (Biochem. Biophys. Res. Commun., 1984) were also the first to report experiments to measure DNA repair, by simply following the decrease of DNA damage over time after challenging cells with ionising radiation. However, this approach is time-consuming and laborious as it requires an extended period of cell culture and is therefore not ideal for biomonitoring studies, which typically require high-throughput processing of many samples. As an alternative approach, the in vitro comet-based repair assay was developed: a cell extract is incubated with a DNA substrate containing specific lesions, and DNA incisions accumulate. The in vitro comet-based repair assay has been modified and improved over the past decade: it was first devised to measure base excision repair of oxidised purines in lymphocytes (Collins et al., Mutagenesis, 2001), but has since been adapted for other lesions and thus other repair pathways, as well as being applied to tissue samples in addition to cell suspensions.Even after 30 years, the comet assay is still in a growth phase, with many new users each year. Many questions are repeatedly raised, which may seem to have self-evident answers, but clearly, it is necessary to reiterate them for the benefit of the new audience, and sometimes being forced to think again about old topics can shed new light. Different applications of the comet assay are discussed, including: genotoxicity testing, human biomonitoring, DNA repair studies, environmental biomonitoring and clinical studies. Furthermore, we will consider and where possible answer questions, including the ones raised by Raymond Tice at the 8th International Comet Assay Workshop in Perugia (Italy 2009): i) What is the spectrum of DNA damage detected by the various versions of the Comet assay?; ii) What are the limitations associated with each application?; iii) What should be done to standardize the assay for biomonitoring studies?; iv) Can the Comet assay be used to monitor changes in global methylation status?; What are the best cell types to use for detecting genotoxic substances in vitro?; v) Can the assay be fully automated?; and more. So this ‘Frontiers in Genetics’ research topic will be written for the beginner as well as for the experienced users of the Comet Assay.


Book
Advances in Solid-Phase Microextraction
Authors: ---
Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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Analysis imposes substantial challenges, especially when dealing with analytes present at trace levels in complex matrices. Although modern instrumentation has simplified analyses and makes them more reliable, its use is only the last step of the whole analytical process. On the other hand, sample preparation still represents the bottleneck in many analytical methods and often requires the use of extensive protocols before instrumental analysis. Solid-phase microextraction (SPME) is a well-established sample-prep technique for simultaneous extraction and pre-concentration of compounds from a variety of matrices. Given its compliance with the principles of green analytical chemistry, as well as the simplicity, versatility, and availability of different formats, SPME addresses several challenges associated with the traditional sample preparation approaches and allows for a substantial streamlining of the analytical workflow. This book is the reprint of a Special Issue that includes six contributions provided by some of the world’s leading research groups in the field and focuses on recent advances in solid-phase microextraction.


Book
Advances in Solid-Phase Microextraction
Authors: ---
Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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Abstract

Analysis imposes substantial challenges, especially when dealing with analytes present at trace levels in complex matrices. Although modern instrumentation has simplified analyses and makes them more reliable, its use is only the last step of the whole analytical process. On the other hand, sample preparation still represents the bottleneck in many analytical methods and often requires the use of extensive protocols before instrumental analysis. Solid-phase microextraction (SPME) is a well-established sample-prep technique for simultaneous extraction and pre-concentration of compounds from a variety of matrices. Given its compliance with the principles of green analytical chemistry, as well as the simplicity, versatility, and availability of different formats, SPME addresses several challenges associated with the traditional sample preparation approaches and allows for a substantial streamlining of the analytical workflow. This book is the reprint of a Special Issue that includes six contributions provided by some of the world’s leading research groups in the field and focuses on recent advances in solid-phase microextraction.


Book
Advances in Solid-Phase Microextraction
Authors: ---
Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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Abstract

Analysis imposes substantial challenges, especially when dealing with analytes present at trace levels in complex matrices. Although modern instrumentation has simplified analyses and makes them more reliable, its use is only the last step of the whole analytical process. On the other hand, sample preparation still represents the bottleneck in many analytical methods and often requires the use of extensive protocols before instrumental analysis. Solid-phase microextraction (SPME) is a well-established sample-prep technique for simultaneous extraction and pre-concentration of compounds from a variety of matrices. Given its compliance with the principles of green analytical chemistry, as well as the simplicity, versatility, and availability of different formats, SPME addresses several challenges associated with the traditional sample preparation approaches and allows for a substantial streamlining of the analytical workflow. This book is the reprint of a Special Issue that includes six contributions provided by some of the world’s leading research groups in the field and focuses on recent advances in solid-phase microextraction.


Book
Experimental and Numerical Studies in Biomedical Engineering
Authors: ---
ISBN: 3039212486 3039212478 Year: 2019 Publisher: MDPI - Multidisciplinary Digital Publishing Institute

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The term ‘biomedical engineering’ refers to the application of the principles and problem-solving techniques of engineering to biology and medicine. Biomedical engineering is an interdisciplinary branch, as many of the problems health professionals are confronted with have traditionally been of interest to engineers because they involve processes that are fundamental to engineering practice. Biomedical engineers employ common engineering methods to comprehend, modify, or control biological systems, and to design and manufacture devices that can assist in the diagnosis and therapy of human diseases. This Special Issue of Fluids aims to be a forum for scientists and engineers from academia and industry to present and discuss recent developments in the field of biomedical engineering. It contains papers that tackle, both numerically (Computational Fluid Dynamics studies) and experimentally, biomedical engineering problems, with a diverse range of studies focusing on the fundamental understanding of fluid flows in biological systems, modelling studies on complex rheological phenomena and molecular dynamics, design and improvement of lab-on-a-chip devices, modelling of processes inside the human body as well as drug delivery applications. Contributions have focused on problems associated with subjects that include hemodynamical flows, arterial wall shear stress, targeted drug delivery, FSI/CFD and Multiphysics simulations, molecular dynamics modelling and physiology-based biokinetic models.


Book
Biomarkers of Environmental Toxicants
Authors: ---
Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

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Biomarkers of environmental toxicants are measures of exposures, some of which can serve to assess disease risk and inter-individual susceptibilities. Metabolites, protein and DNA adducts also serve to elucidate the mechanisms of the bioactivation and detoxication of reactive toxicant intermediates. Some environmental chemicals act as modulators of gene and protein activity, and induce the dysbiosis of the microbiome, which impacts the metabolome and overall health. In this Special Issue on “Biomarkers of Environmental Toxicants”, review articles and original research studies are featured, covering the latest bioanalytical, biochemical and mass spectrometry-based technologies, to monitor exposures through targeted and non-targeted methods, and mechanistic studies that examine the biological effects of environmental toxicants in cells and humans. Diverse topics, such as exposome, microbiome, DNA/protein adducts and t-RNA modifications, as well as important environment toxicants, including heavy metals, benzene, phthalates, aldehydes, glycidol, tobacco smoke and aristolochic acids, are covered. Novel analytical methods, such as protein adductomics, DNA adduct analysis in formalin-fixed paraffin-embedded tissues, site-specific mutagenesis assay and accelerator mass spectrometry, are also included. This collection provides a valuable update of the most recent biochemical and analytical tools that employ biomarkers in toxicology research, biomarker discovery, and exposure and risk assessment in population-based studies.

Keywords

Medicine --- manganese --- lead --- cadmium --- arsenic --- hair --- children --- environment --- carcinogen --- DNA adducts --- biomonitoring --- formalin-fixed paraffin-embedded tissues --- biomarker --- mass spectrometry --- human biomonitoring --- urine --- non-occupational exposure --- S-phenyl-mercapturic acid --- HPLC-MS/MS --- glycidol --- Hb adduct --- N-(2.3-dihydroxypropyl)valine --- in vivo --- cancer risk --- UPLC/MS/MS --- aristolochic acids --- food contamination --- environmental pollution --- root uptake --- aristolochic acid nephropathy --- Balkan endemic nephropathy --- chronic kidney disease --- tobacco smoke --- human carcinogen --- biomarkers --- epitranscriptomics --- tRNA modifications --- stress response mechanisms --- codon-biased translation --- phthalate --- DEHP --- human exposure --- toxicity --- reproductive --- accelerator mass spectrometry --- cavity ring down spectrophotometry --- radiocarbon --- naphthalene --- benzo[a]pyrene --- cell turnover --- triclocarban --- metastasis --- haemoglobin --- albumin --- protein adducts --- aldehydes --- genotoxicity --- cancer --- diseases --- oxidative stress --- exposure biomarkers --- high-resolution mass spectrometry --- data-dependent profiling --- derivatization --- biological fluids --- isotope labeling --- DNA lesion --- DNA damage --- shuttle vector technique --- replication block --- mutagenicity --- mutational spectrum --- mutational signature --- DNA repair --- DNA adduct bypass --- site-specific mutagenesis --- chemical exposome --- environmental monitoring --- disease --- bioinformatics --- gut microbiome --- chemical toxicity --- n/a


Book
Method Development and Applications for Reduced-Risk Products in Separation Science
Author:
Year: 2022 Publisher: Basel MDPI - Multidisciplinary Digital Publishing Institute

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Abstract

In recent years, there has been rapid growth in the availability of innovative, non-combustible products, including oral tobacco-derived nicotine (OTDN) products, heated tobacco products (HTPs), and electronic cigarettes (also referred to as e-vapor products; EVPs). Industry, academic, and government researchers are developing and validating analytical methods to extract, separate, identify, and quantitate a variety of analytes from these innovative tobacco products using a wide range of analytical techniques. These analytes include constituents such as nicotine, degradants and impurities, flavors, non-tobacco ingredients, HPHCs, and other currently unknown constituents. In this Special Issue, we received nine contributions that covered the latest analytical methods that have been developed and applied for the chemical characterization or exposure assessment to tobacco product constituents of innovative non-combustible products. This Special Issue is representative of the importance of analytical sciences research in characterizing innovative non-combustible products for guiding product design, determining relative product performance, ensuring consistency during the manufacturing process, informing toxicological risk assessment, and enabling regulatory reporting. The current advances in the development and applications of the analytical methods reported in this Special Issue can be used to inform the harm reduction potential of innovative non-combustible products for adult smokers.


Book
Biomarkers of Environmental Toxicants
Authors: ---
Year: 2020 Publisher: Basel, Switzerland MDPI - Multidisciplinary Digital Publishing Institute

Loading...
Export citation

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Bookmark

Abstract

Biomarkers of environmental toxicants are measures of exposures, some of which can serve to assess disease risk and inter-individual susceptibilities. Metabolites, protein and DNA adducts also serve to elucidate the mechanisms of the bioactivation and detoxication of reactive toxicant intermediates. Some environmental chemicals act as modulators of gene and protein activity, and induce the dysbiosis of the microbiome, which impacts the metabolome and overall health. In this Special Issue on “Biomarkers of Environmental Toxicants”, review articles and original research studies are featured, covering the latest bioanalytical, biochemical and mass spectrometry-based technologies, to monitor exposures through targeted and non-targeted methods, and mechanistic studies that examine the biological effects of environmental toxicants in cells and humans. Diverse topics, such as exposome, microbiome, DNA/protein adducts and t-RNA modifications, as well as important environment toxicants, including heavy metals, benzene, phthalates, aldehydes, glycidol, tobacco smoke and aristolochic acids, are covered. Novel analytical methods, such as protein adductomics, DNA adduct analysis in formalin-fixed paraffin-embedded tissues, site-specific mutagenesis assay and accelerator mass spectrometry, are also included. This collection provides a valuable update of the most recent biochemical and analytical tools that employ biomarkers in toxicology research, biomarker discovery, and exposure and risk assessment in population-based studies.

Keywords

Medicine --- manganese --- lead --- cadmium --- arsenic --- hair --- children --- environment --- carcinogen --- DNA adducts --- biomonitoring --- formalin-fixed paraffin-embedded tissues --- biomarker --- mass spectrometry --- human biomonitoring --- urine --- non-occupational exposure --- S-phenyl-mercapturic acid --- HPLC-MS/MS --- glycidol --- Hb adduct --- N-(2.3-dihydroxypropyl)valine --- in vivo --- cancer risk --- UPLC/MS/MS --- aristolochic acids --- food contamination --- environmental pollution --- root uptake --- aristolochic acid nephropathy --- Balkan endemic nephropathy --- chronic kidney disease --- tobacco smoke --- human carcinogen --- biomarkers --- epitranscriptomics --- tRNA modifications --- stress response mechanisms --- codon-biased translation --- phthalate --- DEHP --- human exposure --- toxicity --- reproductive --- accelerator mass spectrometry --- cavity ring down spectrophotometry --- radiocarbon --- naphthalene --- benzo[a]pyrene --- cell turnover --- triclocarban --- metastasis --- haemoglobin --- albumin --- protein adducts --- aldehydes --- genotoxicity --- cancer --- diseases --- oxidative stress --- exposure biomarkers --- high-resolution mass spectrometry --- data-dependent profiling --- derivatization --- biological fluids --- isotope labeling --- DNA lesion --- DNA damage --- shuttle vector technique --- replication block --- mutagenicity --- mutational spectrum --- mutational signature --- DNA repair --- DNA adduct bypass --- site-specific mutagenesis --- chemical exposome --- environmental monitoring --- disease --- bioinformatics --- gut microbiome --- chemical toxicity --- n/a


Book
Method Development and Applications for Reduced-Risk Products in Separation Science
Author:
Year: 2022 Publisher: Basel MDPI - Multidisciplinary Digital Publishing Institute

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Abstract

In recent years, there has been rapid growth in the availability of innovative, non-combustible products, including oral tobacco-derived nicotine (OTDN) products, heated tobacco products (HTPs), and electronic cigarettes (also referred to as e-vapor products; EVPs). Industry, academic, and government researchers are developing and validating analytical methods to extract, separate, identify, and quantitate a variety of analytes from these innovative tobacco products using a wide range of analytical techniques. These analytes include constituents such as nicotine, degradants and impurities, flavors, non-tobacco ingredients, HPHCs, and other currently unknown constituents. In this Special Issue, we received nine contributions that covered the latest analytical methods that have been developed and applied for the chemical characterization or exposure assessment to tobacco product constituents of innovative non-combustible products. This Special Issue is representative of the importance of analytical sciences research in characterizing innovative non-combustible products for guiding product design, determining relative product performance, ensuring consistency during the manufacturing process, informing toxicological risk assessment, and enabling regulatory reporting. The current advances in the development and applications of the analytical methods reported in this Special Issue can be used to inform the harm reduction potential of innovative non-combustible products for adult smokers.


Book
Method Development and Applications for Reduced-Risk Products in Separation Science
Author:
Year: 2022 Publisher: Basel MDPI - Multidisciplinary Digital Publishing Institute

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Abstract

In recent years, there has been rapid growth in the availability of innovative, non-combustible products, including oral tobacco-derived nicotine (OTDN) products, heated tobacco products (HTPs), and electronic cigarettes (also referred to as e-vapor products; EVPs). Industry, academic, and government researchers are developing and validating analytical methods to extract, separate, identify, and quantitate a variety of analytes from these innovative tobacco products using a wide range of analytical techniques. These analytes include constituents such as nicotine, degradants and impurities, flavors, non-tobacco ingredients, HPHCs, and other currently unknown constituents. In this Special Issue, we received nine contributions that covered the latest analytical methods that have been developed and applied for the chemical characterization or exposure assessment to tobacco product constituents of innovative non-combustible products. This Special Issue is representative of the importance of analytical sciences research in characterizing innovative non-combustible products for guiding product design, determining relative product performance, ensuring consistency during the manufacturing process, informing toxicological risk assessment, and enabling regulatory reporting. The current advances in the development and applications of the analytical methods reported in this Special Issue can be used to inform the harm reduction potential of innovative non-combustible products for adult smokers.

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